I found I made a mistake during bisecting. In order to get rid of the latest compile problem I upgraded libgl to the 9.0.1 version. Now gnome starts and does not show the problem. I finished bisecting and found no more bad commits. To cross check I tried the last bad commit 8c436b4ea670d4630767a742dac5aad14e18aef9. But I found it good this time. I downgraded libgl again to 8.0.4. Now gnome does not start but finds a problem it can not recover from. I don't know what I had the firost time I checked 8c436b4ea670d4630767a742dac5aad14e18aef9.